Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to Phytophthora capsici in Chili Pepper.
Identifieur interne : 000541 ( Main/Exploration ); précédent : 000540; suivant : 000542Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to Phytophthora capsici in Chili Pepper.
Auteurs : Nayoung Kim [Corée du Sud] ; Won-Hee Kang [Corée du Sud] ; Jundae Lee [Corée du Sud] ; Seon-In Yeom [Corée du Sud]Source :
- BioMed research international [ 2314-6141 ] ; 2019.
Descripteurs français
- KwdFr :
- Capsicum (génétique), Chromosomes de plante (génétique), Famille multigénique (génétique), Locus de caractère quantitatif (génétique), Maladies des plantes (génétique), Marqueurs génétiques (génétique), Phytophthora (pathogénicité), Sites de fixation (génétique), Techniques de génotypage (méthodes).
- MESH :
- génétique : Capsicum, Chromosomes de plante, Famille multigénique, Locus de caractère quantitatif, Maladies des plantes, Marqueurs génétiques, Sites de fixation.
- méthodes : Techniques de génotypage.
- pathogénicité : Phytophthora.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Genetic Markers.
- genetics : Binding Sites, Capsicum, Chromosomes, Plant, Multigene Family, Plant Diseases, Quantitative Trait Loci.
- methods : Genotyping Techniques.
- pathogenicity : Phytophthora.
Abstract
The soil-borne pathogen Phytophthora capsici causes severe destruction of Capsicum spp. Resistance in Capsicum against P. capsici is controlled by numerous minor quantitative trait loci (QTLs) and a consistent major QTL on chromosome 5. Molecular markers on Capsicum chromosome 5 have been developed to identify the predominant genetic contributor to resistance but have achieved little success. In this study, previously reported molecular markers were used to reanalyze the major QTL region on chromosome 5 (6.2 Mbp to 139.2 Mbp). Candidate resistance gene analogs (RGAs) were identified in the extended major QTL region including 14 nucleotide binding site leucine-rich repeats, 3 receptor-like kinases, and 1 receptor-like protein. Sequence comparison of the candidate RGAs was performed between two Capsicum germplasms that are resistant and susceptible, respectively, to P. capsici. 11 novel RGA-based markers were developed through high-resolution melting analysis which were closely linked to the major QTL for P. capsici resistance. Among the markers, CaNB-5480 showed the highest cosegregation rate at 86.9% and can be applied to genotyping of the germplasms that were not amenable by previous markers. With combination of three markers such as CaNB-5480, CaRP-5130 and CaNB-5330 increased genotyping accuracy for 61 Capsicum accessions. These could be useful to facilitate high-throughput germplasm screening and further characterize resistance genes against P. capsici in pepper.
DOI: 10.1155/2019/1093186
PubMed: 30719438
PubMed Central: PMC6335758
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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University, Jinju 52828, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus Program), Gyeongsang National University, Jinju 52828</wicri:regionArea><wicri:noRegion>Jinju 52828</wicri:noRegion></affiliation></author><author><name sortKey="Kang, Won Hee" sort="Kang, Won Hee" uniqKey="Kang W" first="Won-Hee" last="Kang">Won-Hee Kang</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828</wicri:regionArea><wicri:noRegion>Jinju 52828</wicri:noRegion></affiliation></author><author><name sortKey="Lee, Jundae" sort="Lee, Jundae" uniqKey="Lee J" first="Jundae" last="Lee">Jundae Lee</name><affiliation wicri:level="1"><nlm:affiliation>Department of Horticulture, Chonbuk National University, Jeonju 54896, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Horticulture, Chonbuk National University, Jeonju 54896</wicri:regionArea><wicri:noRegion>Jeonju 54896</wicri:noRegion></affiliation></author><author><name sortKey="Yeom, Seon In" sort="Yeom, Seon In" uniqKey="Yeom S" first="Seon-In" last="Yeom">Seon-In Yeom</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus Program), Gyeongsang National University, Jinju 52828, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus Program), Gyeongsang National University, Jinju 52828</wicri:regionArea><wicri:noRegion>Jinju 52828</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828</wicri:regionArea><wicri:noRegion>Jinju 52828</wicri:noRegion></affiliation></author></analytic><series><title level="j">BioMed research international</title><idno type="eISSN">2314-6141</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Binding Sites (genetics)</term><term>Capsicum (genetics)</term><term>Chromosomes, Plant (genetics)</term><term>Genetic Markers (genetics)</term><term>Genotyping Techniques (methods)</term><term>Multigene Family (genetics)</term><term>Phytophthora (pathogenicity)</term><term>Plant Diseases (genetics)</term><term>Quantitative Trait Loci (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Capsicum (génétique)</term><term>Chromosomes de plante (génétique)</term><term>Famille multigénique (génétique)</term><term>Locus de caractère quantitatif (génétique)</term><term>Maladies des plantes (génétique)</term><term>Marqueurs génétiques (génétique)</term><term>Phytophthora (pathogénicité)</term><term>Sites de fixation (génétique)</term><term>Techniques de génotypage (méthodes)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Binding Sites</term><term>Capsicum</term><term>Chromosomes, Plant</term><term>Multigene Family</term><term>Plant Diseases</term><term>Quantitative Trait Loci</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Capsicum</term><term>Chromosomes de plante</term><term>Famille multigénique</term><term>Locus de caractère quantitatif</term><term>Maladies des plantes</term><term>Marqueurs génétiques</term><term>Sites de fixation</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genotyping Techniques</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Techniques de génotypage</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The soil-borne pathogen <i>Phytophthora capsici</i> causes severe destruction of <i>Capsicum</i> spp. Resistance in <i>Capsicum</i> against <i>P. capsici</i> is controlled by numerous minor quantitative trait loci (QTLs) and a consistent major QTL on chromosome 5. Molecular markers on <i>Capsicum</i> chromosome 5 have been developed to identify the predominant genetic contributor to resistance but have achieved little success. In this study, previously reported molecular markers were used to reanalyze the major QTL region on chromosome 5 (6.2 Mbp to 139.2 Mbp). Candidate resistance gene analogs (RGAs) were identified in the extended major QTL region including 14 nucleotide binding site leucine-rich repeats, 3 receptor-like kinases, and 1 receptor-like protein. Sequence comparison of the candidate RGAs was performed between two <i>Capsicum</i> germplasms that are resistant and susceptible, respectively, to <i>P. capsici.</i> 11 novel RGA-based markers were developed through high-resolution melting analysis which were closely linked to the major QTL for <i>P. capsici</i> resistance. Among the markers, CaNB-5480 showed the highest cosegregation rate at 86.9% and can be applied to genotyping of the germplasms that were not amenable by previous markers. With combination of three markers such as CaNB-5480, CaRP-5130 and CaNB-5330 increased genotyping accuracy for 61 <i>Capsicum</i> accessions. These could be useful to facilitate high-throughput germplasm screening and further characterize resistance genes against <i>P. capsici</i> in pepper.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30719438</PMID><DateCompleted><Year>2019</Year><Month>05</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>02</Month><Day>25</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2314-6141</ISSN><JournalIssue CitedMedium="Internet"><Volume>2019</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>BioMed research international</Title><ISOAbbreviation>Biomed Res Int</ISOAbbreviation></Journal><ArticleTitle>Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to <i>Phytophthora capsici</i> in Chili Pepper.</ArticleTitle><Pagination><MedlinePgn>1093186</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1155/2019/1093186</ELocationID><Abstract><AbstractText>The soil-borne pathogen <i>Phytophthora capsici</i> causes severe destruction of <i>Capsicum</i> spp. Resistance in <i>Capsicum</i> against <i>P. capsici</i> is controlled by numerous minor quantitative trait loci (QTLs) and a consistent major QTL on chromosome 5. Molecular markers on <i>Capsicum</i> chromosome 5 have been developed to identify the predominant genetic contributor to resistance but have achieved little success. In this study, previously reported molecular markers were used to reanalyze the major QTL region on chromosome 5 (6.2 Mbp to 139.2 Mbp). Candidate resistance gene analogs (RGAs) were identified in the extended major QTL region including 14 nucleotide binding site leucine-rich repeats, 3 receptor-like kinases, and 1 receptor-like protein. Sequence comparison of the candidate RGAs was performed between two <i>Capsicum</i> germplasms that are resistant and susceptible, respectively, to <i>P. capsici.</i> 11 novel RGA-based markers were developed through high-resolution melting analysis which were closely linked to the major QTL for <i>P. capsici</i> resistance. Among the markers, CaNB-5480 showed the highest cosegregation rate at 86.9% and can be applied to genotyping of the germplasms that were not amenable by previous markers. With combination of three markers such as CaNB-5480, CaRP-5130 and CaNB-5330 increased genotyping accuracy for 61 <i>Capsicum</i> accessions. These could be useful to facilitate high-throughput germplasm screening and further characterize resistance genes against <i>P. capsici</i> in pepper.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Nayoung</ForeName><Initials>N</Initials><Identifier Source="ORCID">0000-0003-3082-5954</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus Program), Gyeongsang National University, Jinju 52828, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Won-Hee</ForeName><Initials>WH</Initials><AffiliationInfo><Affiliation>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Jundae</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0002-2029-5702</Identifier><AffiliationInfo><Affiliation>Department of Horticulture, Chonbuk National University, Jeonju 54896, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yeom</LastName><ForeName>Seon-In</ForeName><Initials>SI</Initials><Identifier Source="ORCID">0000-0002-8385-0179</Identifier><AffiliationInfo><Affiliation>Department of Agricultural Plant Science, Division of Applied Life Science (BK21 Plus Program), Gyeongsang National University, Jinju 52828, Republic of Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Agriculture & Life Science, Gyeongsang National University, Jinju 52828, Republic of Korea.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>01</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Biomed Res Int</MedlineTA><NlmUniqueID>101600173</NlmUniqueID></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001665" MajorTopicYN="N">Binding Sites</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060005" MajorTopicYN="N">Genotyping Techniques</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName><QualifierName UI="Q000235" 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sort="Kang, Won Hee" uniqKey="Kang W" first="Won-Hee" last="Kang">Won-Hee Kang</name><name sortKey="Lee, Jundae" sort="Lee, Jundae" uniqKey="Lee J" first="Jundae" last="Lee">Jundae Lee</name><name sortKey="Yeom, Seon In" sort="Yeom, Seon In" uniqKey="Yeom S" first="Seon-In" last="Yeom">Seon-In Yeom</name><name sortKey="Yeom, Seon In" sort="Yeom, Seon In" uniqKey="Yeom S" first="Seon-In" last="Yeom">Seon-In Yeom</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
| This area was generated with Dilib version V0.6.38. |  |